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Software for motif discovery and next generation sequencing analysis



HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

Redeem codes (also called activation or promo codes) are typically purchased from official resellers or received through official promotional events.

Don't pay for storage you haven't tested. Use a PikPak Code today, feel the speed of offline torrenting, and then decide if you want to keep the 10TB beast.

A: No. You can only use one invite code at signup. You can use one promo code at checkout. You cannot stack two promo codes.

The process is simple but has a strict 12-hour window after you create your account. Follow these steps:

Some third-party resellers (like SEAGM or OffGamers) sell PikPak Gift Cards. The code is a 16-digit string you redeem on the official website to add wallet balance.

Program Components and Older Versions

Pikpak Code ((top)) | FREE – 2024 |

Redeem codes (also called activation or promo codes) are typically purchased from official resellers or received through official promotional events.

Don't pay for storage you haven't tested. Use a PikPak Code today, feel the speed of offline torrenting, and then decide if you want to keep the 10TB beast. pikpak code

A: No. You can only use one invite code at signup. You can use one promo code at checkout. You cannot stack two promo codes. Redeem codes (also called activation or promo codes)

The process is simple but has a strict 12-hour window after you create your account. Follow these steps: feel the speed of offline torrenting

Some third-party resellers (like SEAGM or OffGamers) sell PikPak Gift Cards. The code is a 16-digit string you redeem on the official website to add wallet balance.


Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)


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Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu